Academic Performance
Journal paper
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| No. | Author | Paper Name | Published Journal | Year | Co-authors |
|---|---|---|---|---|---|
| 1 | Wen-Chi Chang | Weijian Zhuang, Hua Chen, Meng Yang, Jianping Wang, Manish K. Pandey, Chong Zhang, Wen-Chi Chang, ... Rajeev K. Varshney. (2019). The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics, 51, 865–876. | GENETICS & HEREDITY | 2019 | |
| 2 | Wen-Chi Chang | Kai Yao Huang, Tzong Yi Lee, Hui Ju Kao, Chen Tse Ma, Chao Chun Lee, Tsai Hsuan Lin, Wen-Chi Chang, Hsien Da Huang. (2019). DbPTM in 2019: Exploring disease association and cross-Talk of post-Translational modifications. Nucleic acids research, 47(D1), D298-D308. | BIOCHEMISTRY & MOLECULAR BIOLOGY | 2019 | |
| 3 | Wen-Chi Chang | Chi Nga Chow, Tzong Yi Lee, Yu Cheng Hung, Guan Zhen Li, Kuan Chieh Tseng, Ya Hsin Liu, Po Li Kuo, Han Qin Zheng, Wen-Chi Chang. (2019). Plantpan3.0: A new and updated resource for reconstructing transcriptional regulatory networks from chip-seq experiments in plants. Nucleic acids research, 47(D1), D1155-D1163. | BIOCHEMISTRY & MOLECULAR BIOLOGY | 2019 | |
| 4 | Wen-Chi Chang | Chi Nga Chow, Yi Fan Chiang-Hsieh, Chia Hung Chien, Han Qin Zheng, Tzong Yi Lee, Nai Yun Wu, Kuan Chieh Tseng, Ping Fu Hou, Wen-Chi Chang. (2018). Delineation of condition specific Cis- and Trans-acting elements in plant promoters under various Endo- and exogenous stimuli. BMC genomics, 19, [85] | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | 2018 | |
| 5 | Wen-Chi Chang | Mazen Alazem, Kuan Chieh Tseng, Wen-Chi Chang, Jang Kyun Seo, Kook Hyung Kim. (2018). Elements Involved in the Rsv3-Mediated Extreme Resistance against an Avirulent Strain of Soybean Mosaic Virus. Viruses, 10(11) | VIROLOGY | 2018 | |
| 6 | Wen-Chi Chang | Tseng, K. C., Chiang-Hsieh, Y. F., Pai, H., Chow, C. N., Lee, S. C., Zheng, H. Q., ... Chang, W-C. (2018). MicroRPM: A microRNA prediction model based only on plant small RNA sequencing data. Bioinformatics, 34(7), 1108-1115. | MATHEMATICAL & COMPUTATIONAL BIOLOGY | 2018 | |
| 7 | Wen-Chi Chang | Hou, P. F., Chien, C. H., Chiang-Hsieh, Y. F., Tseng, K. C., Chow, C. N., Huang, H-J., & Chang, W-C. (2018). Paddy-upland rotation for sustainable agriculture with regards to diverse soil microbial community. Scientific reports, 8(1), [7966]. | MULTIDISCIPLINARY SCIENCES | 2018 | Hao-Jen Huang |
| 8 | Wen-Chi Chang | Tze Hann Ng, Chia Wei Lu, Shih Shun Lin, Che Chih Chang, Loc H. Tran, Wen-Chi Chang, Chu-Fang Lo, Han-Ching Wang. (2018). The Rho signalling pathway mediates the pathogenicity of AHPND-causing V. parahaemolyticus in shrimp. Cellular Microbiology, 20(8), [e12849]. | MICROBIOLOGY | 2018 | |
| 9 | Wen-Chi Chang | Chung Wen Lin, Li Yao Huang, Chao-Li Huang, Yong Chuan Wang, Pei Hsuan Lai, Hao-Ven Wang, Wen-Chi Chang, Tzen-Yuh Chiang, Hao-Jen Huang. (2017). Common stress transcriptome analysis reveals functional and genomic architecture differences between early and delayed response genes. Plant and Cell Physiology, 58(3), 546-559. | PLANT SCIENCES | 2017 | Chao-Li Huang Hao-Jen Huang |
| 10 | Wen-Chi Chang | Zheng, H. Q., Wu, N. Y., Chow, C. N., Tseng, K. C., Chien, C. H., Hung, Y. C., ... Chang, W-C. (2017). EXPath tool—a system for comprehensively analyzing regulatory pathways and coexpression networks from high-throughput transcriptome data. DNA Research, 24(4), 371-375. | GENETICS & HEREDITY | 2017 | |
| 11 | Wen-Chi Chang | Chang, W-C., Zheng, H. Q., & Chen, C. N. N. (2016). Comparative transcriptome analysis reveals a potential photosynthate partitioning mechanism between lipid and starch biosynthetic pathways in green microalgae. Algal Research-Biomass Biofuels and Bioproducts, 16, 54-62. | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | 2016 | |
| 12 | Wen-Chi Chang | Chow, C. N., Zheng, H. Q., Wu, N. Y., Chien, C. H., Huang, H. D., Lee, T. Y., ... Chang, W-C. (2016). PlantPAN 2.0: An update of Plant Promoter Analysis Navigator for reconstructing transcriptional regulatory networks in plants. Nucleic Acids Research, 44(D1), D1154-D1164. | BIOCHEMISTRY & MOLECULAR BIOLOGY | 2016 | |
| 13 | Wen-Chi Chang | Chien, C. H., Chiang-Hsieh, Y. F., Chen, Y. A., Chow, C. N., Wu, N. Y., Hou, P. F., & Chang, W-C. (2015). AtmiRNET: A web-based resource for reconstructing regulatory networks of Arabidopsis microRNAs. Database-The Journal of Biological Databases and Curation, 2015, [bav042]. | MATHEMATICAL & COMPUTATIONAL BIOLOGY | 2015 | |
| 14 | Wen-Chi Chang | Chien, C. H., Chow, C. N., Wu, N. Y., Chiang-Hsieh, Y. F., Hou, P. F., & Chang, W-C. (2015). EXPath: A database of comparative expression analysis inferring metabolic pathways for plants. BMC Genomics, 16, [S6]. | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | 2015 | |
| 15 | Wen-Chieh Tsai | Chuan Ming Yeh, Kwi Mi Chung, Chieh Kai Liang, Wen-Chieh Tsai. (2019). New insights into the symbiotic relationship between orchids and fungi. Applied Sciences (Switzerland), 9(3), [585]. | PHYSICS, APPLIED | 2019 | |
| 16 | Wen-Chieh Tsai | Chia Chi Hsu, Pei Han Lai, Tien Chih Chen, Wen-Chieh Tsai, Jui Lin Hsu, Yu Yun Hsiao, Wen-Luan Wu, Ching Hsiu Tsai, Wen Huei Chen, Hong-Hwa Chen. (2019). PePIF1, a P-lineage of PIF-like transposable element identified in protocorm-like bodies of Phalaenopsis orchids. BMC genomics, 20(1), [25]. | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | 2019 | |
| 17 | Wen-Chieh Tsai | Yu Chen Chuang, Yi Chu Hung, Chi Yu Hsu, Chuan Ming Yeh, Nobutaka Mitsuda, Masaru Ohme-Takagi, Wen-Chieh Tsai, Wen Huei Chen, Hong-Hwa Chen. (2018). A dual repeat cis-element determines expression of GERANYL DIPHOSPHATE SYNTHASE for monoterpene production in phalaenopsis orchids. Frontiers in Plant Science, 9, [765]. | PLANT SCIENCES | 2018 | |
| 18 | Wen-Chieh Tsai | Chuan Ming Yeh, Zhong Jian Liu, Wen-Chieh Tsai. (2018). Advanced Applications of Next-Generation Sequencing Technologies to Orchid Biology. Current Issues in Molecular Biology, 27, 51-70. | BIOCHEMISTRY & MOLECULAR BIOLOGY | 2018 | |
| 19 | Wen-Chieh Tsai | Yu Chen Chuang, Yi Chu Hung, Wen-Chieh Tsai, Wen Huei Chen, Hong-Hwa Chen. (2018). PbbHLH4 regulates floral monoterpene biosynthesis in Phalaenopsis orchids. Journal of Experimental Botany, 69(18), 4363-4377. | PLANT SCIENCES | 2018 | |
| 20 | Wen-Chieh Tsai | Wen-Chieh Tsai, Anne Dievart, Chia Chi Hsu, Yu Yun Hsiao, Shang Yi Chiou, Hsin Huang, Hong-Hwa Chen. (2017). Post genomics era for orchid research. Botanical Studies, 58(1), [61]. | PLANT SCIENCES | 2017 | |
| 21 | Wen-Chieh Tsai | Zhang, G.Q., Liu, K.W., Li, Z., Lohaus, R., Hsiao, Y.Y., Niu, S.C., Wang, J.Y., Lin, Y.C., Xu, Q., Chen, L.J., Yoshida, K., Fujiwara, S., Wang, Z.W., Zhang, Y.Q., Mitsuda, N., Wang, M., Liu, G.H., Pecoraro, L., Huang, H.X., Xiao, X.J., Lin, M., Wu, X.Y., Wu, W.L., Chen, Y.Y., Chang, S.B., Sakamoto, S., Ohme-Takagi, M., Yagi, M., Zeng, S.J., Shen, C.Y., Yeh, C.M*, Luo, Y.B.*, Tsai, W.C.*, Van de Peer, Y.*, Liu, Z.J.*. (2017). The Apostasia genome and the evolution of orchids. Nature 579: 379-383. | MULTIDISCIPLINARY SCIENCES | 2017 | |
| 22 | Wen-Chieh Tsai | Shan Ce Niu, Qing Xu, Guo Qiang Zhang, Yong Qiang Zhang, Wen-Chieh Tsai, Jui Ling Hsu, Chieh Kai Liang, Yi Bo Luo, Zhong Jian Liu. (2016). De novo transcriptome assembly databases for the butterfly orchid Phalaenopsis equestris. Scientific Data, 3, [201683]. | MULTIDISCIPLINARY SCIENCES | 2016 | |
| 23 | Wen-Chieh Tsai | Yu Fu Lin, You Yi Chen, Yu Yun Hsiao, Ching Yu Shen, Jui Ling Hsu, Chuan Ming Yeh, Nobutaka Mitsuda, Masaru Ohme-Takagi, Zhong Jian Liu, Wen-Chieh Tsai. (2016). Genome-wide identification and characterization of TCP genes involved in ovule development of Phalaenopsis equestris. Journal of Experimental Botany, 67(17), 5051-5066. | PLANT SCIENCES | 2016 | |
| 24 | Wen-Chieh Tsai | Xiaobai Li, Aaron Jackson, Ming Xie, Dianxing Wu, Wen-Chieh Tsai, Sheng Zhang. (2016). Proteomic insights into floral biology. Biochimica et Biophysica Acta-Proteins and Proteomics, 1864(8), 1050-1060. | BIOPHYSICS | 2016 | |
| 25 | Wen-Chieh Tsai | Zhang, G. Q., Xu, Q., Bian, C., Tsai, W-C., Yeh, C. M., Liu, K. W., ... Liu, Z. J. (2016). The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution. Scientific reports, 6, [19029]. | MULTIDISCIPLINARY SCIENCES | 2016 | |
| 26 | Wen-Chieh Tsai | Cai, J., Liu, X., Vanneste, K., Proost, S., Tsai, W-C., Liu, K. W., ... Liu, Z. J. (2015). Erratum: The genome sequence of the orchid Phalaenopsis equestris. Nature Genetics, 47 (65-72). | GENETICS & HEREDITY | 2015 | |
| 27 | Wen-Chieh Tsai | Hsu, C. C., Chen, Y. Y., Tsai, W-C., Chen, W. H., & Chen, H-H. (2015). Three R2R3-MYB transcription factors regulate distinct floral pigmentation patterning in Phalaenopsis spp. Plant Physiology, 168(1), 175-191. | PLANT SCIENCES | 2015 | |
| 28 | Ruey-Hua Lee | Huang, L. Y., Lin, C. W., Lee, R-H., Chiang, C. Y., Wang, Y. C., Chang, C. H., & Huang, H-J. (2017). Integrating early transcriptomic responses to rhizotoxins in rice (Oryza sativa. L.) reveals key regulators and a potential early biomarker of cadmium toxicity. Frontiers in Plant Science, 8, [1432]. | PLANT SCIENCES | 2017 | |
| 29 | Ruey-Hua Lee | B. Y. Lin, C. D. Chang, Lynn Ling-Huei Huang, Y. C. Liu, Y. Y. Su, T. C. Chen, Ruey-Hua Lee, Hao-Jen Huang, Wen-Luan Wu, Ching-Chun Chang. (2016). The mitochondrial DNA markers for distinguishing Phalaenopsis species and revealing maternal phylogeny. Biologia Plantarum, 60(1), 68-78. | PLANT SCIENCES | 2016 | |
| 30 | Chi-Chou Chiu | Lin, C. S., Chen, J. J. W., Chiu, C-C., Hsiao, H. C. W., Yang, C. J., Jin, X. H., ... Shih, M. C. (2017). Concomitant loss of NDH complex-related genes within chloroplast and nuclear genomes in some orchids. Plant Journal, 90(5), 994-1006. | PLANT SCIENCES | 2017 | |
| 31 | Chao-Li Huang | Chao-Li Huang, Rakesh Sarkar, Tsai-Wen Hsu, Chia-Fen Yang, Chia-Hung Chien, Wen-Chi Chang, Tzen-Yuh Chiang. Endophytic microbiome of biofuel plant Miscanthus sinensis (Poaceae) interacts with environmental gradients. Microbial Ecology | Microbial Ecology | 2020 | Wen-Chi Chang |
| 32 | Chao-Li Huang | Tran HT, Wang HC, Hsu TW, Sarker R, Huang CL, Chiang TY. (2019) Revegetation on abandoned salt ponds relieves the seasonal fluctuation of soil microbiomes. BMC Genomics, 20:478. | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | 2019 | |
| 33 | Chao-Li Huang | Zheng, Y., Chiang, T-Y., Huang, C-L., & Gong, X. (2018). Highly diverse endophytes in roots of Cycas bifida (Cycadaceae), an ancient but endangered gymnosperm. Journal of Microbiology, 56(5), 337-345. | MICROBIOLOGY | 2018 | |
| 34 | Chao-Li Huang | Chung Wen Lin, Li Yao Huang, Chao-Li Huang, Yong Chuan Wang, Pei Hsuan Lai, Hao-Ven Wang, Wen-Chi Chang, Tzen-Yuh Chiang, Hao-Jen Huang. (2017). Common stress transcriptome analysis reveals functional and genomic architecture differences between early and delayed response genes. Plant and Cell Physiology, 58(3), 546-559. | PLANT SCIENCES | 2017 | Wen-Chi Chang Hao-Jen Huang |
| 35 | Chao-Li Huang | Xun Gong, Kuo Hsiang Hung, Yu Wei Ting, Tsai Wen Hsu, Lenka Malikova, Huyen Trang Tran, Chao-Li Huang, Shih Hui Liu, Tzen-Yuh Chiang. (2017). Frequent gene flow blurred taxonomic boundaries of sections in Lilium L. (Liliaceae). PLoS One, 12(8), [e0183209]. | MULTIDISCIPLINARY SCIENCES | 2017 | |
| 36 | Chao-Li Huang | Huang, C-L. (2016). Miscanthus as an example of ecological genetics and genomics for nonmodel species. Ecological Genetics and Genomics. | Ecological Genetics and Genomics | 2016 | |
| 37 | Chao-Li Huang | Chi Chun Huang, Tsai Wen Hsu, Hao-Ven Wang, Zin Huang Liu, Yi Yen Chen, Chi Te Chiu, Chao-Li Huang, Kuo Hsiang Hung, Tzen-Yuh Chiang. (2016). Multilocus analyses reveal postglacial demographic shrinkage of juniperus morrisonicola (cupressaceae), a dominant alpine species in Taiwan. PLoS ONE, 11(8), [e0161713]. | MULTIDISCIPLINARY SCIENCES | 2016 | |
| 26 | Wen-Chieh Tsai | Cai, J., Liu, X., Vanneste, K., Proost, S., Tsai, W-C., Liu, K. W., ... Liu, Z. J. (2015). Erratum: The genome sequence of the orchid Phalaenopsis equestris. Nature Genetics, 47 (65-72). | GENETICS & HEREDITY | 2015 | |
| 27 | Wen-Chieh Tsai | Hsu, C. C., Chen, Y. Y., Tsai, W-C., Chen, W. H., & Chen, H-H. (2015). Three R2R3-MYB transcription factors regulate distinct floral pigmentation patterning in Phalaenopsis spp. Plant Physiology, 168(1), 175-191. | PLANT SCIENCES | 2015 | |
| 28 | Ruey-Hua Lee | Huang, L. Y., Lin, C. W., Lee, R-H., Chiang, C. Y., Wang, Y. C., Chang, C. H., & Huang, H-J. (2017). Integrating early transcriptomic responses to rhizotoxins in rice (Oryza sativa. L.) reveals key regulators and a potential early biomarker of cadmium toxicity. Frontiers in Plant Science, 8, [1432]. | PLANT SCIENCES | 2017 | |
| 29 | Ruey-Hua Lee | B. Y. Lin, C. D. Chang, Lynn Ling-Huei Huang, Y. C. Liu, Y. Y. Su, T. C. Chen, Ruey-Hua Lee, Hao-Jen Huang, Wen-Luan Wu, Ching-Chun Chang. (2016). The mitochondrial DNA markers for distinguishing Phalaenopsis species and revealing maternal phylogeny. Biologia Plantarum, 60(1), 68-78. | PLANT SCIENCES | 2016 | |
| 30 | Chi-Chou Chiu | Lin, C. S., Chen, J. J. W., Chiu, C-C., Hsiao, H. C. W., Yang, C. J., Jin, X. H., ... Shih, M. C. (2017). Concomitant loss of NDH complex-related genes within chloroplast and nuclear genomes in some orchids. Plant Journal, 90(5), 994-1006. | PLANT SCIENCES | 2017 | |
| 31 | Chao-Li Huang | Chao-Li Huang, Rakesh Sarkar, Tsai-Wen Hsu, Chia-Fen Yang, Chia-Hung Chien, Wen-Chi Chang, Tzen-Yuh Chiang. Endophytic microbiome of biofuel plant Miscanthus sinensis (Poaceae) interacts with environmental gradients. Microbial Ecology | Microbial Ecology | 2020 | Wen-Chi Chang |
| 32 | Chao-Li Huang | Tran HT, Wang HC, Hsu TW, Sarker R, Huang CL, Chiang TY. (2019) Revegetation on abandoned salt ponds relieves the seasonal fluctuation of soil microbiomes. BMC Genomics, 20:478. | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | 2019 | |
| 33 | Chao-Li Huang | Zheng, Y., Chiang, T-Y., Huang, C-L., & Gong, X. (2018). Highly diverse endophytes in roots of Cycas bifida (Cycadaceae), an ancient but endangered gymnosperm. Journal of Microbiology, 56(5), 337-345. | MICROBIOLOGY | 2018 | |
| 34 | Chao-Li Huang | Chung Wen Lin, Li Yao Huang, Chao-Li Huang, Yong Chuan Wang, Pei Hsuan Lai, Hao-Ven Wang, Wen-Chi Chang, Tzen-Yuh Chiang, Hao-Jen Huang. (2017). Common stress transcriptome analysis reveals functional and genomic architecture differences between early and delayed response genes. Plant and Cell Physiology, 58(3), 546-559. | PLANT SCIENCES | 2017 | Wen-Chi Chang Hao-Jen Huang |
| 35 | Chao-Li Huang | Xun Gong, Kuo Hsiang Hung, Yu Wei Ting, Tsai Wen Hsu, Lenka Malikova, Huyen Trang Tran, Chao-Li Huang, Shih Hui Liu, Tzen-Yuh Chiang. (2017). Frequent gene flow blurred taxonomic boundaries of sections in Lilium L. (Liliaceae). PLoS One, 12(8), [e0183209]. | MULTIDISCIPLINARY SCIENCES | 2017 | |
| 36 | Chao-Li Huang | Huang, C-L. (2016). Miscanthus as an example of ecological genetics and genomics for nonmodel species. Ecological Genetics and Genomics. | Ecological Genetics and Genomics | 2016 | |
| 37 | Chao-Li Huang | Chi Chun Huang, Tsai Wen Hsu, Hao-Ven Wang, Zin Huang Liu, Yi Yen Chen, Chi Te Chiu, Chao-Li Huang, Kuo Hsiang Hung, Tzen-Yuh Chiang. (2016). Multilocus analyses reveal postglacial demographic shrinkage of juniperus morrisonicola (cupressaceae), a dominant alpine species in Taiwan. PLoS ONE, 11(8), [e0161713]. | MULTIDISCIPLINARY SCIENCES | 2016 | |
| 38 | Chao-Li Huang | Huang, C-L., Pu, P. H., Huang, H-J., Sung, H-M., Liaw, H-J., Chen, Y-M., ... Chiang, T-Y. (2015). Ecological genomics in Xanthomonas: The nature of genetic adaptation with homologous recombination and host shifts. BMC genomics, 16(1), [188]. | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | 2015 | Hao-Jen Huang |